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For non-biology majors: Essential Cell Biology; Alberts, Bray, et al.; Garland Press (look under Bio219 in the bookstore).
Online Biology text: Kimball's Biology Pages
Pittsburgh Super Computer: Life sciences text - genomics issues
For biology majors: ......Online Lectures in Bioinformatics- Germany
UNIX help (Staben, Kentucky)
An Introduction to the Genetics and Molecular Biology of the Yeast Saccharomyces cerevisiae. Fred Sherman
GENOMICS:Journey to the Center of Biology; Eric S. Lander and Robert A. Weinberg; Science Magazine
Genomics: what is realistically achievable? Ross Overbeek Genome Research
Whither genomics? Andrew W Murray Genome Research
Gene prediction: the end of the beginning Colin Semple
Tutorial - Bases and spaces: resources on the web for accessing the draft human genome Colin Semple
Gordon, D., Abajian, C. and Green, P. (1998) Consed; a graphical tool for sequence finishing. Genome Researh, 8, 195-202.
Ewing, B., Hillier, L., Wendl, M.C. and Green, P. (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Research, 8, 175-185.
Ewing, B. and Green, P. (1998) Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Research, 8, 186-194.
Holstege, F.C.P., Jennings, E.G., Wyrick, J.J., Lee, T.I., Hengartner, C.J., Green, M.R., Golub, T.R., Lander, E.S. and Young, R.A. (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95, 717-728.
Spellman, P. T., G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Molecular Biology of the Cell 9(#12):3273-3297.
Hughes, T., M. Marton, A. Jones, C. Roberts, R. Stoughton, C. Armour, H. Bennett, E. Coffey, H. Dai, Y. He, M. Kidd, A. King, M. Meyer, D. Slade, P. Lum, S. Stepaniants, D. Shoemaker, D. Gachotte, K. Chakraburtty, J. Simon, M. Bard, and S. Friend. 2000. Functional discovery via a compendium of expression profiles. Cell 102:109-126. PPT
Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns. Trevor Hastie1, 2, Robert Tibshirani2, 1, Michael B Eisen3, Ash Alizadeh4, Ronald Levy5, Louis Staudt6, Wing C Chan7, David Botstein8, Patrick Brown4. 2000 Genome Biology
Eisen, M. B., P. T. Spellman, P. O. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci 95:14863-14868.
Aach, J., W. Rindone, and G. Church. 2000. Systematic management and analysis of yeast gene expression data. Genome Research 10:431-445.
Sherlock, G. 2000. Analysis of large-scale gene expression data. Current Opinion in Immunology 12(#2):201-205.
Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., Bult, C.J., Tomb, J.F., Dougherty, B.A. and Merrick, J.M. (1995) Whole-genome random sequencing and assembly of Heamophilus-influenzae RD. Science, 269, 496-512.
Ainscough, R. and al., e. (1998) Genome sequence of the nematode C-elegans: A platform for investigating biology. Science, 282, 2012-2018.
Anderson, S., Zomorodipour, A., Anderson, J., Sicheritz-Ponten, T., Alsmark, U., Podowski, R., Naslund, A., Erikson, A., Winkler, H. and Kurland, C. (1998) The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature, 396, 133-140.
Bult, C. and al, e. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science, 273, 1058-1073.
Fraser, C.M. and al., e. (1995) The minimal gene complement of Mycoplasma genitalium. Science, 270, 397-403.
Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. and Oliver, S.G. (1996) Life with 6000 genes. Science, 274, 546-567.
Evolution and horizontal gene transfer:
Doolittle, W.F. (1999) Lateral genomics. Trends in Biochemical Sciences, 24, M5-M8.
Phylogenetic classification of proteins encoded in complete genomes. Clusters of Orthologous Groups
Proteomics:
Dutt, M.J. and Lee, K.H. (2000) Proteomic analysis. Current Opinion in Biotechnology, 11, 176-179.
Other:
A cultivated taste for yeast . Charles Brenner Genome Research