TIGR Assembler

Sutton G., White, O., Adams, M., and Kerlavage, A. (1995) TIGR Assembler: A new tool for assembling large shotgun sequencing projects.

Phred/Phrap/Consed

General documentation

Phrap overview

Consed overview

STROLL only for procaryotes so far

Chen T, Skiena SS. A case study in genome-level fragment assembly.

Bioinformatics. 2000 Jun;16(6):494-500.

LINUX Command References  

http://home.att.net/~asifb/files/linuxcom.htm

http://camalott.com/tech_support/comunix/commands.html

http://members.linuxstart.com/~pepto/cmd_unix.htm

http://www.pma.caltech.edu/~physlab/Intro/unix.html